PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g048260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 285aa    MW: 31590.5 Da    PI: 8.9942
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g048260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.8e-19136190256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q  +Le+ F+++++++ +++  LAkklgLt rqV vWFqNrRa+ k
  Csa12g048260.1 136 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 190
                     677889***********************************************98 PP

2HD-ZIP_I/II122.81.7e-39136225191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rLeke +eLr +l
  Csa12g048260.1 136 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELR-AL 225
                     69*************************************************************************************9.54 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046188.7E-28297IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.2E-18117190IPR009057Homeodomain-like
SuperFamilySSF466896.68E-19120193IPR009057Homeodomain-like
PROSITE profilePS5007117.135132192IPR001356Homeobox domain
SMARTSM003891.9E-17134196IPR001356Homeobox domain
CDDcd000861.11E-15136193No hitNo description
PfamPF000461.5E-16136190IPR001356Homeobox domain
PRINTSPR000317.5E-6163172IPR000047Helix-turn-helix motif
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
PRINTSPR000317.5E-6172188IPR000047Helix-turn-helix motif
SMARTSM003401.8E-23192235IPR003106Leucine zipper, homeobox-associated
PfamPF021838.1E-8192226IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MMMGKEDLSL SLSLGFAQNH NPVQLNLKPT SSPVSNLQMF PWNQTFVSSS GHQKQQFLRK  60
IDVNSLPTTV DLEEETGVSS PNSTISSTVS GKRRSDREGT SGGGGGAGDD IDVTLDRSSS  120
RGTSDEEEDY GGETCRKKLR LSKDQSAVLE DTFKEHNTLN PKQKLALAKK LGLTARQVEV  180
WFQNRRARTK LKQTEVDCEY LKRCVEKLTE ENRRLEKEAA ELRALKLSPR LYGQMSPPTT  240
LLMCPSCERV AGPSSSNHNQ RSVSLSPWLQ MAHGSTFDVM RPRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184192RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412520.0AJ441252.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT1.
GenBankAK2285870.0AK228587.1 Arabidopsis thaliana mRNA for homeobox-leucine zipper protein HAT1, complete cds, clone: RAFL15-36-J21.
GenBankATU093320.0U09332.1 Arabidopsis thaliana clone HAT1 homeobox protein mRNA, complete cds.
GenBankAY0873220.0AY087322.1 Arabidopsis thaliana clone 34167 mRNA, complete sequence.
GenBankBT0057560.0BT005756.1 Arabidopsis thaliana clone RAFL15-36-J21 (R50164) putative homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA, complete cds.
GenBankBT0061120.0BT006112.1 Arabidopsis thaliana clone U50164 putative homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449617.10.0PREDICTED: homeobox-leucine zipper protein HAT1-like
SwissprotP466000.0HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLR0H1290.0R0H129_9BRAS; Uncharacterized protein
STRINGscaffold_702713.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.11e-168Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein